So earlier today, I configured WebAdaptor (WA) with the new machine that had ArcGIS Server installed underneath which GeoEvent Server runs, and it worked as when I access ArcGIS Server through WA URL, I can see the padlock icon however, when I try to use the internal/port URL I still get the error message of not secure.
I am beginning to think do I need a new CA certificate for this new machine because the certificate that I have been using so far has been issued to WebServer machine and that was the certificate that I exported from IIS and imported in ArcGIS Server admin page.