So - I seemingly uncovered a bug with the "save as" function when using the WAB (dev-version). The work flow to this issue is as such;
Has anyone else experience this issue? I haven't tried it yet, but I'm guessing if I export "MyApp" the links won't work either as the reference will no longer be valid. Anyone have ideas?
Note - in the attachment, the ID's are actually 12 and 13
This does sound like a bug. Have you reported it to esri tech support?