I tried your AGOL Web App this afternoon (3/29/2014) with Internet Explorer 11 on a Windows 7 machine and your web app and popups worked just fine. What operating system are you using? What version of IE are you using? Your app is using the latest version of ESRI's Javascript API: <script type="text/javascript" src="//js.arcgis.com/3.9/"> . Version 3.8 released back in December 2013 fixed issues with IE 11. With the AGOL web apps, if you are using IE you would want to probably use the latest version which is IE 11.