Primoz,
Please let us know the outcome from Marten's questions above.
I would also suggest making sure you start with clean logs for troubleshooting: Shutdown Tomcat; Go to the Tomcat logs directory; delete the logs (archive them somewhere else if you need); Restart Tomcat.
Now that you have clean logs, *wait* (don't connect to geoportal) and go inspect the logs for any errors. Then sequentially proceed with connecting to geoportal, and checking the logs for new messages after *each* interaction with geoportal. This troubleshooting procedure helps me narrow down issues quickly.
The only oddity I noticed in your gpt.xml file is in the ldapAdapter section where you define the gptRegisteredUser group:
[INDENT]<role
key="gptRegisteredUser"
groupDN="CN=gptRegisteredUser,CN=Users,DC=nt,DC=arso,DC=sigov,DC="/>
[/INDENT]
The last 'DC=' is missing an entry. All the other DNs end with a 'DC=si' in your configuration. Could you check that?
Clive