Solved! Go to Solution.
Ideally,the best solution would be to somehow "get into" the zonal statistcs tool through python and change its settings, but I guess that can't be done.
valras = Raster("value_grid.img") zonras = Raster("zones.img") outZSaT = ZonalStatisticsAsTable(zonras, "VALUE", SetNull(valras == 98 or valras == 99, valras) "stats_tbl", "NODATA", "MEAN")
However, you may want to look into this. Using Python map algebra you can set values to NoData before the tool sees them (no extra raster creation required).
SetNull doesn't create a new raster?
Does it change the original raster permanently?