ipython_genutils.py3compat

MattiasTivlin · ‎02-27-2020

Hello all!

When i run this command conda install -c pytorch -c fastai fastai=1.0.54 pytorch=1.1.0 torchvision scikit-image

i get this ModuleNotFoundError: No module named 'ipython_genutils.py3compat'

so what is wrong and how do i fix it?

I'm using Arcgis pro 2.5

Below is the full printout

(arcgispro-py3-clone2) C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2>conda install -c pytorch -c fastai fastai=1.0.54 pytorch=1.1.0 torchvision scikit-image
Fetching package metadata .................
Solving package specifications: .

Package plan for installation in environment C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2:

The following NEW packages will be INSTALLED:

beautifulsoup4: 4.8.2-py36_0
bottleneck: 1.3.2-py36h2a96729_0
cudatoolkit: 10.0.130-0
cymem: 2.0.2-py36h6538335_0 fastai
cython-blis: 0.2.4-py36hfa6e2cd_1 fastai
dataclasses: 0.6-py_0 fastai
fastai: 1.0.54-1 fastai
fastprogress: 0.2.2-py_0 fastai
imageio: 2.6.1-py36_0
jpeg: 9b-hb83a4c4_2
libtiff: 4.1.0-h56a325e_0
murmurhash: 1.0.2-py36h33f27b4_0
networkx: 2.4-py_0
ninja: 1.9.0-py36h74a9793_0
nvidia-ml-py3: 7.352.0-py_0 fastai
olefile: 0.46-py_0
pillow: 6.2.2-py36_0 esri
plac: 0.9.6-py36_0
preshed: 2.0.1-py36h33f27b4_0
pytorch: 1.1.0-py3.6_cuda100_cudnn7_1 pytorch
pywavelets: 1.1.1-py36he774522_0
pyyaml: 3.12-py36h1d1928f_1
scikit-image: 0.15.0-py36_0 esri
soupsieve: 1.9.5-py36_0
spacy: 2.1.8-py36he980bc4_0 fastai
srsly: 0.1.0-py36h6538335_0 fastai
thinc: 7.0.8-py36he980bc4_0 fastai
torchvision: 0.3.0-py36_cu100_1 pytorch
tqdm: 4.42.1-py_0
typing: 3.6.4-py36_0
wasabi: 0.2.2-py_0 fastai
xz: 5.2.4-h2fa13f4_4
yaml: 0.1.6-vc14_0 esri [vc14 ]
zstd: 1.3.7-h508b16e_0

The following packages will be UPDATED:

arcgis: 1.7.0-py36_863 esri --> 1.7.1-py36_969 esri
asn1crypto: 0.24.0-py36_0 --> 1.3.0-py36_0
attrs: 19.1.0-py36_1 --> 19.3.0-py_0
bleach: 3.1.0-py36_0 --> 3.1.0-py_0
ca-certificates: 2019.8.28-0 --> 2020.1.1-0
certifi: 2019.9.11-py36_0 --> 2019.11.28-py36_0
cffi: 1.12.3-py36h7a1dbc1_0 --> 1.14.0-py36h7a1dbc1_0
colorama: 0.4.1-py36_0 --> 0.4.3-py_0
decorator: 4.4.0-py36_1 --> 4.4.1-py_0
importlib_metadata: 0.19-py36_0 --> 1.5.0-py36_0
ipykernel: 5.1.2-py36h39e3cac_0 --> 5.1.4-py36h39e3cac_0
ipython: 7.8.0-py36h39e3cac_0 --> 7.12.0-py36h5ca1d4c_0
ipython_genutils: 0.2.0-py36h3c5d0ee_0 --> 0.2.0-py36_0
jinja2: 2.10.1-py36_0 --> 2.11.1-py_0
jsonschema: 3.0.2-py36_0 --> 3.2.0-py36_0
jupyter_console: 6.0.0-py36_0 --> 6.1.0-py_0
mkl_fft: 1.0.14-py36h14836fe_0 --> 1.0.15-py36h14836fe_0
mkl_random: 1.0.2-py36h343c172_0 --> 1.1.0-py36h675688f_0
more-itertools: 7.2.0-py36_0 --> 8.2.0-py_0
nbformat: 4.4.0-py36h3a5bc1b_0 --> 5.0.4-py_0
numexpr: 2.7.0-py36hdce8814_0 --> 2.7.0-py36h6288b17_0
numpy: 1.16.5-py36h19fb1c0_0 --> 1.16.6-py36h5510c5b_0
numpy-base: 1.16.5-py36hc3f5095_0 --> 1.16.6-py36hc3f5095_0
openpyxl: 2.6.2-py_0 --> 3.0.3-py_0
openssl: 1.1.1d-he774522_0 --> 1.1.1d-he774522_4
packaging: 19.1-py36_0 --> 20.1-py_0
pandas: 0.25.1-py36ha925a31_0 --> 1.0.1-py36h47e9c7a_0
parso: 0.5.1-py_0 --> 0.6.1-py_0
pip: 19.2.3-py36_0 --> 20.0.2-py36_1
pluggy: 0.12.0-py_0 --> 0.13.1-py36_0
prompt_toolkit: 2.0.9-py36_0 --> 3.0.3-py_0
psutil: 5.6.3-py36he774522_0 --> 5.6.7-py36he774522_0
py: 1.8.0-py36_0 --> 1.8.1-py_0
pybind11: 2.3.0-py36_0 esri --> 2.3.0-0 esri
pycparser: 2.19-py36_0 --> 2.19-py_0
pyparsing: 2.4.2-py_0 --> 2.4.6-py_0
pyrsistent: 0.14.11-py36he774522_0 --> 0.15.7-py36he774522_0
pysocks: 1.7.0-py36_0 --> 1.7.1-py36_0
python-dateutil: 2.8.0-py36_0 --> 2.8.1-py_0
pywin32-ctypes: 0.2.0-py36_0 esri --> 0.2.0-py36he119be9_0 esri
requests: 2.22.0-py36_0 --> 2.22.0-py36_1
scipy: 1.3.1-py36h29ff71c_0 --> 1.4.1-py36h9439919_0
setuptools: 41.2.0-py36_0 --> 45.2.0-py36_0
six: 1.12.0-py36_0 --> 1.14.0-py36_0
sqlite: 3.29.0-he774522_0 --> 3.31.1-he774522_0
terminado: 0.8.2-py36_0 --> 0.8.3-py36_0
testpath: 0.4.2-py36_0 --> 0.4.4-py_0
tornado: 6.0.3-py36he774522_0 --> 6.0.3-py36he774522_3
traitlets: 4.3.2-py36h096827d_0 --> 4.3.3-py36_0
urllib3: 1.24.2-py36_0 --> 1.25.8-py36_0
vs2015_runtime: 14.16.27012-hf0eaf9b_0 --> 14.16.27012-hf0eaf9b_1
wcwidth: 0.1.7-py36h3d5aa90_0 --> 0.1.8-py_0
wheel: 0.33.6-py36_0 --> 0.34.2-py36_0
xlrd: 1.2.0-py36_0 --> 1.2.0-py_0
zipp: 0.5.2-py_0 --> 2.2.0-py_0

The following packages will be DOWNGRADED:

gdal: 2.3.3-arcgispro_11 esri [arcgispro] --> 2.3.3-arcgispro_1 esri [arcgispro]

Proceed (/n)? y

Traceback (most recent call last):
File "C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\Scripts\jupyter-nbextension-script.py", line 6, in <module>
from notebook.nbextensions import main
File "C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\lib\site-packages\notebook\__init__.py", line 25, in <module>
from .nbextensions import install_nbextension
File "C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\lib\site-packages\notebook\nbextensions.py", line 28, in <module>
from ipython_genutils.py3compat import string_types, cast_unicode_py2
ModuleNotFoundError: No module named 'ipython_genutils.py3compat'
Traceback (most recent call last):
File "C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\Scripts\jupyter-nbextension-script.py", line 6, in <module>
from notebook.nbextensions import main
File "C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\lib\site-packages\notebook\__init__.py", line 25, in <module>
from .nbextensions import install_nbextension
File "C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\lib\site-packages\notebook\nbextensions.py", line 28, in <module>
from ipython_genutils.py3compat import string_types, cast_unicode_py2
ModuleNotFoundError: No module named 'ipython_genutils.py3compat'

Uninstalling prior versions of arcgis widget
Installing C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\lib\site-packages\arcgis\widgets/js/dist -> arcgis
Up to date: C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\share\jupyter\nbextensions\arcgis\arcgis-map-ipywidget.js
Up to date: C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\share\jupyter\nbextensions\arcgis\arcgis-map-ipywidget.js.c~
Up to date: C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\share\jupyter\nbextensions\arcgis\arcgis-map-ipywidget.js.map
Up to date: C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\share\jupyter\nbextensions\arcgis\arcgis-map-ipywidget.js.map.c~
Up to date: C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\share\jupyter\nbextensions\arcgis\extension.js
Up to date: C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2\share\jupyter\nbextensions\arcgis\extension.js.c~
- Validating: ok

To initialize this nbextension in the browser every time the notebook (or other app) loads:

jupyter nbextension enable arcgis --py --sys-prefix

Enabling notebook extension arcgis/extension...
- Validating: ok

(arcgispro-py3-clone2) C:\Users\mattiv\AppData\Local\ESRI\conda\envs\arcgispro-py3-clone2>

Regards Mattias

DanPatterson_Retired · ‎02-27-2020

one of those deep learning issues?

Did you follow their installation suggestions if it is?

Install deep learning frameworks for ArcGIS—ArcGIS Pro | Documentation

MattiasTivlin · ‎03-04-2020

Hi

Yes i have followed that instructions but i got the same message. I have tried with another computer but with same result.

When i do the installation following packages wants to be downgraded. Is that normal?

The following packages will be DOWNGRADED:

gdal: 2.3.3-arcgispro_11 esri [arcgispro] --> 2.3.3-arcgispro_1 esri [arcgispro]

Proceed (/n)? y

I didnt get this message when i used Arcgis Pro 2.4

When i proceed then it complains about

ModuleNotFoundError: No module named 'ipython_genutils.py3compat'

Then i install conda install -c pytorch -c fastai fastai=1.0.54 pytorch=1.1.0 torchvision scikit-image

When open up a noteook in Arcgis Pro and run this commands it crashes

import arcgisfrom arcgis.learn import prepare_data

It doesn't crash before the installation but then this command want work so i have to install all the packages

# Prepare Datadata = prepare_data(path=r'Data\Training Data 400px 30cm',                    chip_size=400,                      batch_size=8)

Hard to explain but maybe someone have the same issue

Regards Mattias

DanPatterson_Retired · ‎03-04-2020

path=r'Data\Training Data 400px 30cm'

This path won't work since it isn't complete (no drive designation) unless you set your workspace somewhere else.

MattiasTivlin · ‎03-04-2020

Yes i know Thats just an example of what happend when i try to run the code in each step.

It works with arcgis pro 2.4 but not with 2.5 so there is something wrong with the python packages

DanPatterson_Retired · ‎03-05-2020

The instructions in the link are for 2.5, and you need to update the packages for that version if you didn't