Steve,
The Default storage type for a SQL Server sde geodatabase has changed in 10.1. The default is "GEOMETRY" now, because of which the f-tables are no longer created for newly created/loaded data with "DEFAULT" storage type.
You can check the storage type of the layers in ArcCatalog.
RightClick on the Feature Class-->Properties-->General tab--> check the "Storage" details.
In case, the storage is "Geometry" and you need the f-table for your workflow, you'll have to reload the data and select the "SDEBINARY" as the storage type. This should create a corresponding f-table.
Regards,