Are you using Time widget?
Is it possilble for you to share your config file?
Could you also send the url of the first basemap layer thats added to the map?
That layer determines the spatial reference of the map.
Also if you could send the HTTP REST request/response by capturing through firebug / fiddler/ httpfox etc.
<layer label="HomeLand Security Incident Points" type="dynamic" visible="true" url="http://sampleserver3.arcgisonline.com/ArcGIS/rest/services/HomelandSecurity/operations/MapServer"/> <layer label="HomeLand Security Incident Points" type="feature" visible="true" info="widgets/InfoTemplates/SimpleInfoWinWidget.swf" alpha="0" infoconfig="widgets/InfoTemplates/IWT_IncidentPoints.xml" url="http://sampleserver3.arcgisonline.com/ArcGIS/rest/services/HomelandSecurity/operations/FeatureServer/0"/>
<layer label="Oil Spill" type="dynamic" visible="true" url="myurl" visiblelayers="0,1,4" />