I posted this as a comment on this thread, but as the OP's answer involved messing around copying and pasting files, I think it warrants a new question:
I'm currently running ArcGIS Desktop 10.6 (python 2.7) and ArcGIS Pro 2.2.4 (python 3x) on the same machine. I have also installed the Anaconda Python 2.7 32-bit distribution so I can use arcpy in the Spyder IDE. However, this means that some basic tools in Pro now throw errors when I try to run them - I assume because it's trying to access the older version of Python. Does Esri have any official suggestions?
Thank you.