I am trying to align two vector shapefiles (both vector shapefiles are represented by 100m by 100m cells).

In case I want to align all the cells of the two shapefiles, the output will look like:

I used the "align features"-tool on Arcgis Pro. I used different search distances (e.g. 10, 100, 500, 1000m) but each one yields similar (wrong) results as the output above.