The underlying problem is something we'll provide a solution for at the next release. To fix this issue for now - as others have noted- you should be able to workaround this by setting autoResize to false when you create the map. Once you do this you'll have to do the work of resizing the map when the browser resizes.
I'm running my map in a jquery mobile tabbed application, and I got into the same situation: My base map gone, and the map's size was reset to 0 when upgrading from 2.8 to 3.5:I made a small case to repro my issue http://codeviewer.org/view/code:33ce1) Go to tab 22) Go back to tab 1 - map is ok3) Go to tab 2 - type something in input text box4) Voila - map is dead. Confusion level: Extreme. Disable autoResize was a shot in the blind, but it worked.
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