ArcGIS pro: Two shapefile should overlay with in the same folder, they have the same PCG (UTM), same (GCS) but distinct layer property extent XY (top, bottom, left, right) value (both in meter). How could I fix this problem?
Not sure about your question.
Do you want to Recalculate Feature Class Extent (Data Management)—ArcGIS Pro | Documentation
Or are you saying that they don't overlap and they should?
If it is the latter, then one or both are not correctly defined. It could be as simple as an erroneous datum definition or a GCS has been defined as a PCS or a PCS as a GCS
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