Since nobody answered I had to debug it further. Finally I found the problem.ArcGIS Server cannot handle custom coordinate systems. You need to make sure that your map service is authored with a coordinate system with a well known ID (WKID) otherwise you run into a number of troubles. I would wish the API would check for that or even better it should handle custom coordinate systems. Anyhow, as soon as the service is authored with a WKID things seem o.k..
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