Over a decade later, still the same issue in Pro 3.3.x. Allegedly Interoperability Extension has an unofficial script that can do just this. Surprising this was not in ArcGIS 1.0 or 1.x back in the 80s. And the docs lead one to believe this tool would do what it says but it does not. It seems to not really compare geometry and produces strange results despite the two versions of my FC having GUIDs which match, since it's just a newer copy of the same dataset.
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