This answered my question!
The biggest difference is that you need to have an editable point feature service (lines and polys are coming in a future release) in the map for it to be compatible with the Collector. If you want to share the map with me I can take a look.
In the app itself from the sign in page there should be a link that says learn more you can tap that to get more information on how to author maps for data collection, that link will take you to http://resources.arcgis.com/en/collector/ where we have a few tutorials to help you get up and running. Once you've authored a map for collection, log in to the app with your organizational account and it should show up.
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