make sure that you have set the geoprocessing options to overwrite existing outputs
"Overwriting tool output
The Overwrite the outputs of geoprocessing operations check box controls whether tools automatically overwrite any existing output when run. When it is checked, you receive a warning before tool execution that the output exists, but the tool executes and overwrites the output dataset. With this option off, existing outputs are not overwritten, and the tool displays an error, preventing you from executing the tool."