I have built an ArcGIS Pro map with 1 map tab, 1 layout tab and 14 features all stored in a single File GeoDB. I am trying to make a multi-series layout for PDF using "Layout properties > Spatial series > map extent > Clip to index feature" when I look at the layout it looks correct (picture 1), when I create the PDF several of my layers do not clip.
In the map tab > map properties > Clip Layers > I have nothing selected to be excluded. (picture 2)
1. map and layout look.
2.PDF export look with not clipped layers: