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With Portal for ArcGIS 10.3.1, has anyone else found that adding a layer to existing mxd and overwriting an existing ArcGIS Server map service scrambles up the already configured popups in the already configured web map popups and Web Appbuilder's Query w

Question asked by billfox on Aug 13, 2015
Latest reply on May 20, 2016 by billfox

I added an additional layer from our enterprise geodatabase to an existing mxd.
The mxd's layers point to the enterprise geodatabase and the mxd is published to our Portal for ArcGIS 10.3.1/ArcGIS Server 10.3.1 site.

I used the overwrite option and after it successfully publishes the Web AppBuilder application we already had working fine is not showing the correct attributes in the pop-ups.

I opened the web map to see if the configured pop-ups were correct and found some strange results.

It looks like adding a new feature class to the middle of the drawing order in the mxd pushed the web map pointers around so that opening the configure popup for one layer in the web map makes the dialog show attributes from a different layer in the web map.
I had to re-configure each pop-up again for most of the layers in the web map.
Some layers were not affected. I think the layers that below the new layer were affected.

Then I had to delete and re-create the Web AppBuilder's query widget setup which had a couple queries in it (search by apn and search by address)

Is this a known bug? Is there a work around?