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Jumbled Pop-ups in ArcGIS Online Maps

Question asked by ridemgis on Apr 13, 2015

I have a published mxd file with several point layers.  In my arcgis web map


they appear as a single layer (Regulated Facilities) with sub-layers.  Each of the subs has a pop-up configured.  If I go back to my mxd file to add, delete or change the order of the layers the pop-ups get jumbled in the webmap.  What I mean is that I'll click on a feature and the pop-up will reference a different layer.  Is there a way to prevent this?