What specifically are you trying to do that is being blocked for datasets stored in a SQL Server DBO schema geodatabase? Are you trying to register as branch versioned?
I should be able to create a version within the database as well as the service. Also, UN should be able to follow the security protocols of a DBO schema and if you are the DBO. Right now, you need a user schema for the UN. Pre-ArcGIS 9.2 tech.
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