topic find number of overlaps between segments in Python Questions https://community.esri.com/t5/python-questions/find-number-of-overlaps-between-segments/m-p/100612#M7809 <HTML><HEAD></HEAD><BODY><SPAN>Hi</SPAN><BR /><BR /><SPAN>I have two files </SPAN><BR /><BR /><SPAN>File1</SPAN><BR /><SPAN>68&nbsp; 310</SPAN><BR /><BR /><SPAN>File2</SPAN><BR /><SPAN>61 64</SPAN><BR /><SPAN>159 162</SPAN><BR /><SPAN>169 172</SPAN><BR /><SPAN>113 116</SPAN><BR /><SPAN>252 255</SPAN><BR /><SPAN>266 269</SPAN><BR /><SPAN>271 274</SPAN><BR /><SPAN>290 293</SPAN><BR /><BR /><SPAN>could you please help me to calculate overlap of region from file1 and file2</SPAN><BR /><BR /><SPAN>Thanks in advance</SPAN><BR /><BR /><SPAN>Jyothi</SPAN></BODY></HTML> Fri, 16 May 2014 07:41:21 GMT jyothisane 2014-05-16T07:41:21Z find number of overlaps between segments https://community.esri.com/t5/python-questions/find-number-of-overlaps-between-segments/m-p/100612#M7809 <HTML><HEAD></HEAD><BODY><SPAN>Hi</SPAN><BR /><BR /><SPAN>I have two files </SPAN><BR /><BR /><SPAN>File1</SPAN><BR /><SPAN>68&nbsp; 310</SPAN><BR /><BR /><SPAN>File2</SPAN><BR /><SPAN>61 64</SPAN><BR /><SPAN>159 162</SPAN><BR /><SPAN>169 172</SPAN><BR /><SPAN>113 116</SPAN><BR /><SPAN>252 255</SPAN><BR /><SPAN>266 269</SPAN><BR /><SPAN>271 274</SPAN><BR /><SPAN>290 293</SPAN><BR /><BR /><SPAN>could you please help me to calculate overlap of region from file1 and file2</SPAN><BR /><BR /><SPAN>Thanks in advance</SPAN><BR /><BR /><SPAN>Jyothi</SPAN></BODY></HTML> Fri, 16 May 2014 07:41:21 GMT https://community.esri.com/t5/python-questions/find-number-of-overlaps-between-segments/m-p/100612#M7809 jyothisane 2014-05-16T07:41:21Z Re: find number of overlaps between segments https://community.esri.com/t5/python-questions/find-number-of-overlaps-between-segments/m-p/100613#M7810 <HTML><HEAD></HEAD><BODY><SPAN>What do you mean by overlap, you do not explain what these numbers represent? Are they ID's or some sort of measurement?</SPAN></BODY></HTML> Fri, 16 May 2014 07:53:15 GMT https://community.esri.com/t5/python-questions/find-number-of-overlaps-between-segments/m-p/100613#M7810 DuncanHornby 2014-05-16T07:53:15Z Re: find number of overlaps between segments https://community.esri.com/t5/python-questions/find-number-of-overlaps-between-segments/m-p/100614#M7811 <HTML><HEAD></HEAD><BODY><BLOCKQUOTE class="jive-quote">What do you mean by overlap, you do not explain what these numbers represent? Are they ID's or some sort of measurement?</BLOCKQUOTE><BR /><SPAN> </SPAN><BR /><SPAN>numbers indicate start and end position of DNA sequence. </SPAN><BR /><SPAN>let us say </SPAN><BR /><BR /><SPAN> File 1</SPAN><BR /><SPAN>start&nbsp; end</SPAN><BR /><SPAN>1&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 2</SPAN><BR /><SPAN>3&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 6</SPAN><BR /><BR /><SPAN>File 2</SPAN><BR /><SPAN>start&nbsp; end</SPAN><BR /><SPAN>0&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 1</SPAN><BR /><SPAN>1&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 5</SPAN><BR /><BR /><SPAN>have&nbsp; total overlap of 3 at positions 1,3,4&nbsp; (end exclusiveness, end positions are not included)</SPAN></BODY></HTML> Fri, 16 May 2014 08:09:56 GMT https://community.esri.com/t5/python-questions/find-number-of-overlaps-between-segments/m-p/100614#M7811 jyothisane 2014-05-16T08:09:56Z Re: find number of overlaps between segments https://community.esri.com/t5/python-questions/find-number-of-overlaps-between-segments/m-p/100615#M7812 <HTML><HEAD></HEAD><BODY><SPAN>This forum is about using python for ArcGIS, a geographic information application. It's not a general python forum. You may want to try stackoverflow.com or google for more general, or perhaps specific to biology, python forums.</SPAN></BODY></HTML> Fri, 16 May 2014 12:24:35 GMT https://community.esri.com/t5/python-questions/find-number-of-overlaps-between-segments/m-p/100615#M7812 Zeke 2014-05-16T12:24:35Z