topic Another Pro 2.6 Clone problem in ArcGIS Pro Questions

Another Pro 2.6 Clone problem

JoeBorgione — Sat, 11 Dec 2021 21:29:34 GMT

I can't recall how many times I've cloned python environments for ArcGIS pro and then added packages to them, but, this one takes the cake.

Using the ArcGIS pro package mis-manager I install spyder 3.something and spyder kernel 1.9.2 and upon launching spyder I get the 'Spyder has encountered an internal problem' window, telling me:

plugin = mod.PLUGIN_CLASS(self)
AttributeError: '_ModuleMock' object has no attribute 'PLUGIN_CLASS'‍‍

Well cowboy, this isn't my first rodeo (see _ModuleMock object has to attribute 'PLUGIN CLASS' for example) so I open a python command window in my new clone and run

conda update spyder‍

But, after that the sh## storm really starts. I get another internal problem window with so many issues, I can't believe my eyes:

Here is the full list:

  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\plugins\editor\widgets\codeeditor.py", line 1393, in handle_hover_response
    self._request_hover_clicked)
TypeError: CodeEditor.sig_display_object_info[str, bool].emit(): argument 1 has unexpected type 'list'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "C:\EnvClones\arcgispro26\lib\logging\__init__.py", line 994, in emit
    msg = self.format(record)
  File "C:\EnvClones\arcgispro26\lib\logging\__init__.py", line 840, in format
    return fmt.format(record)
  File "C:\EnvClones\arcgispro26\lib\logging\__init__.py", line 577, in format
    record.message = record.getMessage()
  File "C:\EnvClones\arcgispro26\lib\logging\__init__.py", line 338, in getMessage
    msg = msg % self.args
ValueError: incomplete format
Call stack:
  File "C:\EnvClones\arcgispro26\Scripts\spyder-script.py", line 10, in <module>
    sys.exit(main())
  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\app\start.py", line 219, in main
    mainwindow.main()
  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\app\mainwindow.py", line 3763, in main
    mainwindow = run_spyder(app, options, args)
  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\app\mainwindow.py", line 3679, in run_spyder
    app.exec_()
  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\plugins\completion\plugin.py", line 302, in <lambda>
    lambda: self.receive_timeout(req_id))
  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\plugins\completion\plugin.py", line 136, in receive_timeout
    self.howto_send_to_codeeditor(req_id)
  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\plugins\completion\plugin.py", line 177, in howto_send_to_codeeditor
    self.skip_and_send_to_codeeditor(req_id)
  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\plugins\completion\plugin.py", line 205, in skip_and_send_to_codeeditor
    self.gather_and_send_to_codeeditor(request_responses)
  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\plugins\completion\plugin.py", line 273, in gather_and_send_to_codeeditor
    response_instance.handle_response(req_type, responses)
  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\plugins\editor\widgets\codeeditor.py", line 1019, in handle_response
    handler(params)
  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\plugins\editor\widgets\codeeditor.py", line 1406, in handle_hover_response
    self.log_lsp_handle_errors("Error when processing hover")
  File "C:\EnvClones\arcgispro26\lib\site-packages\spyder\plugins\editor\widgets\codeeditor.py", line 1050, in log_lsp_handle_errors
    logger.error('%', 1, stack_info=True)
Message: '%'
Arguments: (1,)
‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍‍

I've wiped my previous environments (I'll remember what other package dependencies I need to fix tomorrow when my over night scripts fail). I get the same lengthy list of issues if I do a straight conda install for spyder.

And to think everything was going so well today too....

Suggestions? I guess I could uninstall ArcGIS Pro entirely, and reinstall, but then what's the point in 'upgrading'?

Dan Patterson‌

(I never know which of you is the right one...)

Re: Another Pro 2.6 Clone problem

DanPatterson — Tue, 04 Aug 2020 23:30:36 GMT

Joe Borgione We are both wondering why you tried installing Spyder 3? (and was the new look post fly fishing?)

I installed Spyder in the base/main environment and the only issue I had was that Matplotlib doesn't work in ArcGIS Pro notebooks.

But that isn't a real problem since

https://community.esri.com/people/danretired/blog/2020/08/01/notebooks-in-spyder

do a really good job, unless you want to see a map... but why would you want to see a map in an ArcGIS Pro Notebook, when you can just look at the map... anyway, we digress .

I suspect it is the IPython widgets (or dependencies) conflicting with what is not in Pro 2.6.

I haven't tracked the issues down with Matplotlib, but ipython is used by Pro, Matplotlib and spyder and the latest version of Spyder uses upgraded ipython and the widgets.

So in short, install Spyder 4.14 ... in your clone if you must

Re: Another Pro 2.6 Clone problem

DanPatterson — Wed, 05 Aug 2020 00:22:52 GMT

Joe Borgione‌

apparently others are having clone issues

https://community.esri.com/thread/257533-trying-to-clone-python-environment-in-arcgis-pro-26

Re: Another Pro 2.6 Clone problem

JoeBorgione — Wed, 05 Aug 2020 01:29:25 GMT

Both Dans- yes the new look is post fly fishing; actually on what I affectionatley call the 'Mighty' Weber River not far from home. The old me was really the young me, when I used do a lot of back country skiing.

At any rate, using conda for the install instead of Pro, I did install 4.1.4 spyder but ended up with the same laundry list of issues. (I have seen the other post you mention; now there are two data points and we can draw a line...)

Since you don't clone you are adding packages right to the default env with conda, right? And you haven't see any issues as I describe? Scheduled for a fish day in the morning but I'll get righ back at it day after tomorrow and maybe scrap the clone. (Prepping for retirement: My wife said the other day, "Just think how good your casting will be once your'e retired!"... Love that woman to pieces!)

Oh, this: why would you want to see a map in an ArcGIS Pro Notebook, when you can just look at the map. Been wondering the same thing!

Re: Another Pro 2.6 Clone problem

JoeBorgione — Thu, 06 Aug 2020 16:01:59 GMT

So in short, install Spyder 4.14 ... in your clone if you must

Okay- here is what I ended up doing; I wiped the the clone, and re-cloned the default that pro 2.6 provides Then, using conda, not arcgis pro, I install spyder using:

conda install spyder=4.1.3‍

No errors. Yet...

Re: Another Pro 2.6 Clone problem

JoeBorgione — Thu, 06 Aug 2020 16:07:47 GMT

Just to continue the discussion: Kory Kramer‌: are you hearing any more issues with installing the latest Spyder version for ArcGIS Pro 2.6?

Re: Another Pro 2.6 Clone problem

DanPatterson — Thu, 06 Aug 2020 17:56:17 GMT

Just don't use matplotlib in ArcGIS Pro notebooks, you can't make graphs. If you want to get adventurous

https://community.esri.com/people/danretired/blog/2020/08/01/notebooks-in-spyder

if you need notebooks but not maps

PS you installed 4.1.3 upgrade! 4.1.4, unless that was a finger slip

Re: Another Pro 2.6 Clone problem

DavidWasserman — Thu, 06 Aug 2020 18:14:26 GMT

I have to say also I am running into issues. Full environment deletes and re-installs are not necessarily clearing up the issue.
Upgrading is becoming a pain with these Pro updates. I think for advanced users we might be on the verge to suspecting every update disrupting conda at our firm.

Re: Another Pro 2.6 Clone problem

DanPatterson — Thu, 06 Aug 2020 18:19:28 GMT

David... you might want to chime in here... python, conda, packages whatever

https://community.esri.com/thread/257737-timeline-for-python-upgrade

Re: Another Pro 2.6 Clone problem

JoeBorgione — Thu, 06 Aug 2020 18:33:39 GMT

Nope... I didn't install 4.1.4 because of the issues I've encountered Sticking with what I know works with arcgis pro, and hoping it all works with arcgis pro 2.6

Re: Another Pro 2.6 Clone problem

DavidWasserman — Thu, 06 Aug 2020 19:22:37 GMT

On my end I am seeing verification errors upon cloning, and I had to do a complete deletion of my previous conda environments to get a working clone.

(arcgispro-py3) C:\Program Files\ArcGIS\Pro\bin\Python\envs\arcgispro-py3>conda env list
# conda environments:
#
arcgispro-py3 * C:\Program Files\ArcGIS\Pro\bin\Python\envs\arcgispro-py3
root C:\Program Files\ArcGIS\Pro\bin\Python

(arcgispro-py3) C:\Program Files\ArcGIS\Pro\bin\Python\envs\arcgispro-py3>conda create --name geoscipy --clone arcgispro-py3
Source: C:\Program Files\ArcGIS\Pro\bin\Python\envs\arcgispro-py3
Destination: C:\Users\dwasserman\AppData\Local\ESRI\conda\envs\geoscipy
Packages: 141
Files: 19
CondaVerificationError: The package for backcall located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\backcall-0.1.0-py36_0
appears to be corrupted. The path 'Lib/site-packages/backcall/__pycache__/__init__.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for backcall located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\backcall-0.1.0-py36_0
appears to be corrupted. The path 'Lib/site-packages/backcall/__pycache__/_signatures.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for backcall located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\backcall-0.1.0-py36_0
appears to be corrupted. The path 'Lib/site-packages/backcall/__pycache__/backcall.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for et_xmlfile located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\et_xmlfile-1.0.1-py36h3d2d736_0
appears to be corrupted. The path 'Lib/site-packages/et_xmlfile/__pycache__/__init__.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for et_xmlfile located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\et_xmlfile-1.0.1-py36h3d2d736_0
appears to be corrupted. The path 'Lib/site-packages/et_xmlfile/__pycache__/xmlfile.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for et_xmlfile located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\et_xmlfile-1.0.1-py36h3d2d736_0
appears to be corrupted. The path 'Lib/site-packages/et_xmlfile/tests/__pycache__/__init__.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for et_xmlfile located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\et_xmlfile-1.0.1-py36h3d2d736_0
appears to be corrupted. The path 'Lib/site-packages/et_xmlfile/tests/__pycache__/common_imports.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for et_xmlfile located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\et_xmlfile-1.0.1-py36h3d2d736_0
appears to be corrupted. The path 'Lib/site-packages/et_xmlfile/tests/__pycache__/helper.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for et_xmlfile located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\et_xmlfile-1.0.1-py36h3d2d736_0
appears to be corrupted. The path 'Lib/site-packages/et_xmlfile/tests/__pycache__/test_incremental_xmlfile.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for send2trash located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\send2trash-1.5.0-py36_0
appears to be corrupted. The path 'Lib/site-packages/send2trash/__pycache__/__init__.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for send2trash located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\send2trash-1.5.0-py36_0
appears to be corrupted. The path 'Lib/site-packages/send2trash/__pycache__/compat.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for send2trash located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\send2trash-1.5.0-py36_0
appears to be corrupted. The path 'Lib/site-packages/send2trash/__pycache__/exceptions.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for send2trash located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\send2trash-1.5.0-py36_0
appears to be corrupted. The path 'Lib/site-packages/send2trash/__pycache__/plat_gio.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for send2trash located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\send2trash-1.5.0-py36_0
appears to be corrupted. The path 'Lib/site-packages/send2trash/__pycache__/plat_osx.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for send2trash located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\send2trash-1.5.0-py36_0
appears to be corrupted. The path 'Lib/site-packages/send2trash/__pycache__/plat_other.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for send2trash located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\send2trash-1.5.0-py36_0
appears to be corrupted. The path 'Lib/site-packages/send2trash/__pycache__/plat_win.cpython-36.pyc'
specified in the package manifest cannot be found.
CondaVerificationError: The package for simplegeneric located at C:\Program Files\ArcGIS\Pro\bin\Python\pkgs\simplegeneric-0.8.1-py36_2
appears to be corrupted. The path 'Lib/site-packages/__pycache__/simplegeneric.cpython-36.pyc'
specified in the package manifest cannot be found.

I am in the process of checking if this clone works, and it looks like it might. My process to "fix" my issues were:

1. Delete the Python Conda Folder with Admin access, copy out some open source conda environments out before hand

2. Delete arcgispro-py3

3. Repair arcgispro-py3

4. Reclone arcgispro-py3 - still get verification errors, but arcpy seems to work

5. Further testing (will fill in later)

Re: Another Pro 2.6 Clone problem

ErikLash1 — Sat, 29 Aug 2020 02:27:47 GMT

Pro 2.6 clean default environment from fresh install. Conda'd clone. Conda installed Spyder 4.1.4. Spyder generates errors. Same result when Spyder conda'd in default environment.

Re: Another Pro 2.6 Clone problem

ErikLash1 — Sat, 29 Aug 2020 18:17:44 GMT

Got everything working in the clone. Found that in my clones something was going wrong with the installers - behavior was not as expected.

NodeJS was particularly troublesome. It was installing but the required updates to associated packages were not being installed no matter how I tried. It was also only able to install 14.9 even though I tried to force lower versions.

Ended up updating all packages in the default clone manually then trying nodejs again. At that point 10.13.0 installed and it all came together. No more npm errors. Able to get jupyter lab running properly.

Then installed Spyder and Spyder Notebook.

Everything working now but to get it working had to delete my older clones and the contents of C:\Users\user\AppData\Local\ESRI\conda\ and start over.

BTW: found that one of the problems I was encountering with Spyder was this bug in the hover tool. Simply disabled hover ability to fix. - Spyder 4.0.0 Tool Tips

Thanks everyone who gave me assistance on this ...

Re: Another Pro 2.6 Clone problem

DanPatterson — Sat, 29 Aug 2020 21:16:51 GMT

Erik Lash‌ next time you go to install, make sure you remove any vestiges of Pro AND conda. Your comment about having extra clones that you have to remove is a warning that things could go wrong. If you want them, move the folder and rename it for future salvage or deletion