topic Re: Deep Learning to Assess Palm Tree Health: .emd file error in ArcGIS Image Analyst Questions

Deep Learning to Assess Palm Tree Health: .emd file error

deleted-user-stdf5pSqu_qT — Mon, 03 Feb 2020 14:38:00 GMT

I'm following the lesson "Use Deep Learning to Assess Palm Tree Health". I've had some issues trying to train the model and decided to skip ahead to reviewing the model. I'm stuck on the step "Palm tree detection." In this step I'm trying to run the Detect Objects Using Deep Learning tool, using the .emd file provided in the lesson. I get the following error:

I'm using ArcGIS Pro 2.4.3.

Does anyone have the same issue? Any suggestions would be appreciated. Thanks!

Re: Deep Learning to Assess Palm Tree Health: .emd file error

KarstenKelm — Mon, 10 Feb 2020 17:42:44 GMT

In addition, i upgraded to ArcPro 2.5 and now the Python Package Manager shows the "palm-detection" env with an error showing "Version Mismatch" - I upgraded the Pro version in the env as well, but that did not fix the problem.

Re: Deep Learning to Assess Palm Tree Health: .emd file error

Anonymous User — Mon, 10 Feb 2020 21:21:12 GMT

That error is likely because the software cannot find the deep learning Python package. We are working on making sure these error messages are more accurate, but in the meantime, make sure you have followed the instructions here:

Install deep learning frameworks for ArcGIS—ArcGIS Pro | Documentation

Make sure to create a new Python environment by cloning the default Python environment in the ArcGIS Pro settings.

Re: Deep Learning to Assess Palm Tree Health: .emd file error

Anonymous User — Mon, 10 Feb 2020 21:26:12 GMT

There are some good suggestions on this conversation as well:
https://community.esri.com/thread/243500-deep-learning-to-assess-palm-tree-preparedata-problem

Re: Deep Learning to Assess Palm Tree Health: .emd file error

KarstenKelm — Mon, 10 Feb 2020 21:53:38 GMT

Thanks for the fast reply!! The tensorflow-gpu and keras-gpu packages need to be installed, even though I won't be able to utilize a GPU?

Re: Deep Learning to Assess Palm Tree Health: .emd file error

Anonymous User — Mon, 10 Feb 2020 22:35:48 GMT

@Karsten yep! The tools check to make sure everything has been installed correctly, and the list provided in the doc are just the minimum packages required to run deep learning tools

Re: Deep Learning to Assess Palm Tree Health: .emd file error

KarstenKelm — Mon, 10 Feb 2020 22:57:44 GMT

yea, I did all that... still getting this:

I don't have a GPU available, could that be part of the problem?

Re: Deep Learning to Assess Palm Tree Health: .emd file error

Anonymous User — Tue, 11 Feb 2020 20:34:43 GMT

We're wondering if there is a version mis-match here. If ArcGIS Pro 2.5 is installed, you should have the arcgis 1.7.0 package installed (go to active python env in Python Command Prompt and type in "conda list" to checked installed Python packages). Did you try setting up a brand new cloned environment and following the steps in the documentation? You could be using an old version of the arcgis Python library from the previously-installed version of Pro.

Re: Deep Learning to Assess Palm Tree Health: .emd file error

deleted-user-stdf5pSqu_qT — Wed, 12 Feb 2020 08:19:56 GMT

I've encountered the same error mentioned in that topic and have followed the suggestions in the conversation (trying different versions of the mentionend Python packages and at one point even downgrading to Python API version 1.6), but with no luck. That's why I decided to skip the step to train the model.

Unfortunately I'm unable to test your other suggestion, as our Image Analyst trial period has ended.

Thanks for your reply!

Re: Deep Learning to Assess Palm Tree Health: .emd file error

KarstenKelm — Wed, 12 Feb 2020 17:59:44 GMT

Yes, I started from scratch. New env and installed all the packages mentioned in earlier posts.

I am running arcgispro 2.5 and arcgis 1.7.0 along with the packages required and described in the tutorial.

( conda install -c fastai -c pytorch fastai=1.0.54 pytorch=1.1.0 torchvision ) as well as scikit-image 0.15.0. To no avail...

Even though I managed to train the model myself ( with solid help from our ML engineers ), in order to just get through the tutorial, I am trying to load the emd file that came with the downloaded tutorial data ( C:\DeepLearning\Data ), but I am still getting the above mentioned image.

Here is what I am doing:

- start ArcPro 2.5 and the CoconutHealth project

- open the "Detect Objects Using Deep Learing" tool

- Input Raster "Kolovai Palms"

- Output Detected Objects "PalmTrees"

- Model Definition "CoconutTrees.emd" (from C:\DeepLearning\Data)

and this error pops up:

I did find out that the machine I am using has a NVIDIA Quadro M4000 GPU.

Re: Deep Learning to Assess Palm Tree Health: .emd file error

KarstenKelm — Wed, 12 Feb 2020 18:57:09 GMT

got it to work. after editing the (1) _ssd.py and (2) _data.py files.

These are located here:

...\C\Program Files\ArcGIS\Pro\bin\Python\envs\palm-detection2\Lib\site-packages\arcgis\learn\models\_ssd.py

...\C\Program Files\ArcGIS\Pro\bin\Python\envs\palm-detection2\Lib\site-packages\arcgis\learn\_data.py

We added "arcgis.learn" before each ".model" :

Now I can access the next steps such as padding (56???)-

Re: Deep Learning to Assess Palm Tree Health: .emd file error

Anonymous User — Wed, 12 Feb 2020 20:51:18 GMT

Okay, this is helpful. We are updating the Learn Lesson, and we're going to look through some of these issues to make sure it's easier to get set up. Thanks so much for posting your fix!

Re: Deep Learning to Assess Palm Tree Health: .emd file error

Anonymous User — Tue, 03 Aug 2021 08:54:20 GMT

Hello Friend !

I updated arc pro from 2.5 to 2.8.1,i also facing same error .

when I try to create deep learning environment using Python command prompt from these steps i am getting an error message as conflicts in package.

conda install fastai=1.0.54

conda install pytorch=1.1.0 conda

install libtiff=4.0.10 --no-deps

I tried your last steps as you guided but still i am facing same issue .

...\C\Program Files\ArcGIS\Pro\bin\Python\envs\palm-detection2\Lib\site-packages\arcgis\learn\models\_ssd.py

...\C\Program Files\ArcGIS\Pro\bin\Python\envs\palm-detection2\Lib\site-packages\arcgis\learn\_data.py

Kindly help me how to come out from this .

you can contact me on krishnanihar@squ.edu.om

Thank you in advance

Re: Deep Learning to Assess Palm Tree Health: .emd file error

heksam — Fri, 05 Apr 2024 13:52:17 GMT

I am on the same stage, but when I add the correct model definition, arcgis just quits and the normal "the application has stopped" window comes up. Does anyone have a solution to it? I have arcgis pro 3.2 and deep learning installed. Even tried a new environment, but does not help.